PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 408aa    MW: 43465.8 Da    PI: 9.3552
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.2e-52331651128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...... 95 
               lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++      
  EMT33003  33 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASgtgcgl 132
               79****************************.89***************988899****************************************9877777 PP

       NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                +e+ g+kk Lvfy+g+ pkg kt+W+mheyrl
  EMT33003 133 VREKLGVKKALVFYRGKPPKGLKTNWIMHEYRL 165
               6677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6130206IPR003441NAC domain
PROSITE profilePS5100559.72933206IPR003441NAC domain
PfamPF023652.3E-2734165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGSSDSSSGS AQKAARHQHE PPPPRQRGSA PELPPGFRFH PTDEELVVHY LKKKAAKVPL  60
PVTIIAEVDL YKFDPWELPE KATFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD  120
KPILASGTGC GLVREKLGVK KALVFYRGKP PKGLKTNWIM HEYRLTDASG STTTSRPPPP  180
PPVTGGSRAA ASLRLDDWVL CRIYKKINKA AAGDQQRSME CEDSVEDAVT AYPLYATAGM  240
AGAGAHGSNY ASSSLLHHQD SHFLDGLFTA DDAGLSAGAT SLSHLAAAAR ASPAPTKQFL  300
APSSSTPFNW LEASAAGILP QARNFPGFNR SRNVGNMSLS STADMAGAAG NAVNAMSAFM  360
NPLPVQDGTY HQHHVILGAP LAPEATAGAA TSGFQHHAVQ ISGVNWNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-72252095171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8208890.0KM820889.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D1 (NAM-D1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562891.10.0PREDICTED: NAC transcription factor NAM-B2-like
SwissprotA0SPJ30.0NAMA1_TRITD; NAC transcription factor NAM-A1
TrEMBLF8SJ360.0F8SJ36_WHEAT; NAC transcription factor NAM-D1
TrEMBLM8CFK30.0M8CFK3_AEGTA; NAC domain-containing protein 18
STRINGBRADI1G24390.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-87NAC domain containing protein 25